One thing I cant get past is. The low end is fine but it hesitates really bad before the power band kicks. I have messed around with the air screw according to the KDX jetting guide on the site. I have made it better but the hesitation before the power band kicks in doesnt seem right. So after messing around with the air screw for awhile. I took a look at the KIPS and noticed that the alignment is off by one tooth. Plus I think the PO didnt align the KIPS up right to the other KIPS gears. The piece with the horizontal teeth is pushed forward too far.

This is what I was expect it to look like

I am really reluctant to start tearing into the engine if this wouldn't cause the hesitation issue. Do you think this could be the cause of the mid throttle hesitation? Other than the mid throttle hesitation the bike seems to be fine. Starts fine, idles without any issues, top end seems to be a little weak but ok.