1) the expansion chamber has a longer baffle section which lowers the supercharging effect and stretching it out over a wider RPM range
2) the carburetor is a 28mm instead of the normal 35mm. That lessens engine power at high RPM.
3) the CDI has slightly different timing and a 1.5uf charge capacitor instead of the normal 1uf. This lessens spark power which directly lessens engine power (according to the research paper "Devices to improve the performance of a conventional two-stroke spark ignition engine" http://www.dragonfly75.com/moto/ImproveEngine.pdf). I have a CDI bench tester and testing the two sizes of capacitors gave me these results:

How to undo the "detunes"
1) put a better pipe on it. I put a Pro Circuit pipe on mine and loved it. I used my KDX200SR for street, play riding, and motocross.
2) upgrade to a 35mm carburetor.
3) upgrade the CDI with my Performance CDI which has a 1uf or 1.2uf capacitor in it. It also has an adjustable timing curve for fine tuning so the curve can match your engine/pipe for best performance.
(click on my signature link for more info about upgrading the SR)